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2007
van der Meijden, A., Vences M., Hoegg S., Boistel R., Channing A., & Meyer A. (2007).  Nuclear gene phylogeny of narrow-mouthed toads (Family: Microhylidae) and a discussion of competing hypotheses concerning their biogeographical origins. Molecular Phylogenetics and Evolution. 44, 1017-1030. Abstract
Measey, J. G., Vences M., Drewes R. C., Chiari Y., Melo M., & Bourles B. (2007).  Freshwater paths across the ocean: molecular phylogeny of the frog Ptychadena newtoni gives insights into amphibian colonization of oceanic islands. Journal of Biogeography. 34, 7-20. Abstract
2005
van der Meijden, A., Vences M., Hoegg S., & Meyer A. (2005).  A previously unrecognized radiation of ranid frogs in Southern Africa revealed by nuclear and mitochondrial DNA sequences. Molecular Phylogenetics & Evolution. 37, 674-685. Abstract
2004
Hoegg, S., Vences M., Brinkmann H., & Meyer A. (2004).  Phylogeny and comparative substitution rates of frogs inferred from sequences of three nuclear genes. Molecular Biology & Evolution. 21, 1188-1200. Abstract
van der Meijden, A., Vences M., & Meyer A. (2004).  Novel phylogenetic relationships of the enigmatic brevicipitine and scaphiophrynine toads as revealed by sequences from the nuclear Rag-1 gene. Proceedings of the Royal Society of London - Series B: Biological Sciences. 271, S378-S381. Abstract
Vences, M., Kosuch J., Rödel M-O., Lötters S., Channing A., Glaw F., et al. (2004).  Phylogeography of Ptychadena mascareniensis suggests transoceanic dispersal in a widespread Africa-Malagasy frog lineage. Journal of Biogeography. 31, 593-601.
2003
Vences, M., Vieites D. R., Glaw F., Brinkmann H., Kosuch J., Veith M., et al. (2003).  Multiple overseas dispersal in amphibians. Proceedings of the Royal Society of London - Series B: Biological Sciences. 270, 2435-2442. Abstract
Vences, M., Kosuch J., Glaw F., Böhme W., & Veith M. (2003).  Molecular phylogeny of hyperoliid treefrogs: biogeographic origin of Malagasy and Seychellean taxa and re-analysis of familial paraphyly. Journal of Zoological Systematics and Evolutionary Research. 41, 205-215.
2001
Odierna, G., Vences M., Aprea G., Lötters S., & Andreone F. (2001).  Chromosome data for Malagasy poison frogs (Amphibia: Ranidae: Mantella) and their bearing on taxonomy and phylogeny. Zoological Science (Tokyo). 18, 505-514. Abstract
2000
Vences, M., Wanke S., Odierna G., Kosuch J., & Veith M. (2000).  Molecular and karyological data on the South Asian genera Indirana, Nyctibatrachus and Nanophrys (Anura: Ranidae). Hamadryad. 25, 75-82.
1999
Channing, A., & Vences M. (1999).  The advertisement call, breeding biology, description of the tadpole and taxonomic status of Bufo dombensis, a little-known dwarf toad from southern Africa. South African Journal of Zoology. 34, 74-79.
1998
Glaw, F., Vences M., & Boehme W. (1998).  Systematic revision of the genus Aglyptodactylus Boulenger, 1919 (Amphibia: Ranidae), and analysis of its phylogenetic relationships to other Madagascan ranid genera (Tomopterna, Boophis, Mantidactylus, and Mantella). Journal of Zoological Systematics & Evolutionary Research. 36, 17-37. Abstract